{"id":1861,"date":"2014-02-13T20:42:23","date_gmt":"2014-02-13T20:42:23","guid":{"rendered":"http:\/\/sciences-unamur.be\/bio\/system-ecotox\/?page_id=1861"},"modified":"2021-05-17T18:04:40","modified_gmt":"2021-05-17T18:04:40","slug":"lab-resources","status":"publish","type":"page","link":"https:\/\/sciences-unamur.be\/bio\/system-ecotox\/resources-2\/lab-resources\/","title":{"rendered":"Lab resources"},"content":{"rendered":"<h3>Statistic resources<\/h3>\n<ul>\n<li><a href=\"https:\/\/statistique-et-logiciel-r.com\/\">Statistiques et logiciel R<\/a> : A practical website in french to address major questions with R. Great tutorials !<\/li>\n<li><a href=\"https:\/\/toptipbio.com\/qpcr-multiple-reference-genes\/\">Toptipbio<\/a> : How to analyse qPCR results with multiple reference genes<\/li>\n<li><a href=\"http:\/\/www.statisticshowto.com\">Statistics How To<\/a> : A practical guide to solve most common statistic problems<\/li>\n<li><a href=\"http:\/\/www.statisticshowto.com\/experimental-design\/\">Experimental design<\/a> : How to design correctly an experiment<\/li>\n<li><a href=\"http:\/\/www.statisticshowto.com\/multiple-testing-problem\/\">Multiple testing problem<\/a> : When we test a lot of variables (ex: proteomics, methylomics,&#8230;)<\/li>\n<li><a href=\"http:\/\/www.biostathandbook.com\/multiplecomparisons.html\">FDR<\/a> : what is a false discovery rate and how to calculate it using the Benjamini-Hochberg procedure<\/li>\n<li><a href=\"http:\/\/www.statisticshowto.com\/statistical-power\/\">Power analysis<\/a> : how and why to calculate the power of a test<\/li>\n<li><a href=\"http:\/\/www.gpower.hhu.de\/\" target=\"_blank\" rel=\"noopener\">G*Power :<\/a>\u00a0Freeware to calculate a priori or a posteriori the power of your statistical analysis<\/li>\n<\/ul>\n<h3>Zebrafish resources<\/h3>\n<ul>\n<li><a href=\"http:\/\/zfin.org\/\" target=\"_blank\" rel=\"noopener\">Zetfin<\/a> : the zebrafish model organism database<\/li>\n<\/ul>\n<h3>Mangrove rivulus resources<\/h3>\n<ul>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/Taxonomy\/Browser\/wwwtax.cgi?id=37003\" target=\"_blank\" rel=\"noopener\">NCBI<\/a> : taxonomy browser for K. marmoratus<\/li>\n<\/ul>\n<h3>Ecotoxicology resources<\/h3>\n<ul>\n<li><a href=\"http:\/\/vminteq.lwr.kth.se\/\" target=\"_blank\" rel=\"noopener\">Visual MINTEQ<\/a><br \/>\nTo calculate metal speciation in water<\/li>\n<li><a href=\"http:\/\/ctdbase.org\/\" target=\"_blank\" rel=\"noopener\">The Comparative Toxicogenomics Database<\/a><br \/>\nIntegration of OMICS data to investigate how chemicals affect the environment and human health<\/li>\n<\/ul>\n<h3>Genomic resources<\/h3>\n<ul>\n<li><a href=\"https:\/\/gold.jgi.doe.gov\/\" target=\"_blank\" rel=\"noopener\">JGI GOLD<\/a> : genomes online database<\/li>\n<li><a href=\"https:\/\/www.ensembl.org\/index.html\">Ensembl genome browser 94<\/a><\/li>\n<\/ul>\n<h3>Proteomic resources<\/h3>\n<ul>\n<li><a href=\"http:\/\/www.mbio.ncsu.edu\/bioedit\/bioedit.html\" target=\"_blank\" rel=\"noopener\">bioEdit<br \/>\n<\/a>Sequence alignment editor<\/li>\n<li><a href=\"http:\/\/www-helix.inrialpes.fr\/old\/article228.html\" target=\"_blank\" rel=\"noopener\">PepLine<br \/>\n<\/a>Software for protein identification and gene localization from tandem mass spectrometry data<\/li>\n<li><a href=\"http:\/\/genetics.bwh.harvard.edu\/cgi-bin\/msfilter\/eagleeye.cgi\" target=\"_blank\" rel=\"noopener\">EagleEye<br \/>\n<\/a>Software for filtering MS\/MS queries<\/li>\n<li><a href=\"http:\/\/proteomics.ucsd.edu\/Software\/PepNovo\/\" target=\"_blank\" rel=\"noopener\">PepNovo<br \/>\n<\/a>High throughput de novo peptide sequencing tool for tandem mass spectrometry data<\/li>\n<li><a href=\"http:\/\/genetics.bwh.harvard.edu\/msblast\/index.html\" target=\"_blank\" rel=\"noopener\">MS BLAST<br \/>\n<\/a>MS BLAST sequence-similarity search engine<\/li>\n<li><a href=\"http:\/\/www.uniprot.org\/\" target=\"_blank\" rel=\"noopener\">Uniprot<\/a><br \/>\nComprehensive, high-quality and freely accessible resource of protein sequence and functional information<\/li>\n<li><a href=\"http:\/\/www.expasy.org\/proteomics\" target=\"_blank\" rel=\"noopener\">ExPASy<br \/>\n<\/a>The bioinformatic resources portail<\/li>\n<li><a href=\"http:\/\/pfam.sanger.ac.uk\/\" target=\"_blank\" rel=\"noopener\">Pfam<\/a><br \/>\nTo work on functional domains of proteins<\/li>\n<li><a href=\"http:\/\/www.pantherdb.org\/\" target=\"_blank\" rel=\"noopener\">Panther<\/a><br \/>\nGene ontology tool<\/li>\n<li><a href=\"http:\/\/www.blast2go.org\/\" target=\"_blank\" rel=\"noopener\">Blast2GO<\/a><br \/>\nGene ontology tool<\/li>\n<li><a href=\"http:\/\/cbl-gorilla.cs.technion.ac.il\/\" target=\"_blank\" rel=\"noopener\">GOrilla<\/a><br \/>\nGOrilla is a tool for identifying and visualizing enriched GO terms in ranked lists of genes.<\/li>\n<li><a href=\"http:\/\/revigo.irb.hr\/\" target=\"_blank\" rel=\"noopener\">REViGO<\/a><br \/>\nREViGO is a web server that can take long lists of Gene Ontology terms and summarize them by removing redundant GO terms.<\/li>\n<li><a href=\"http:\/\/www.brenda-enzymes.org\/\" target=\"_blank\" rel=\"noopener\">Brenda<\/a><br \/>\nEnzymes database<\/li>\n<li><a href=\"http:\/\/www.genomicglossaries.com\/content\/proteomics.asp\" target=\"_blank\" rel=\"noopener\">Proteomics Glossary<\/a><\/li>\n<li><a href=\"http:\/\/www.genome.jp\/kegg\/pathway.html\" target=\"_blank\" rel=\"noopener\">KEGG<\/a><br \/>\nPathway mapping<\/li>\n<\/ul>\n<h3>Other resources<\/h3>\n<ul>\n<li><a href=\"http:\/\/www.mendeley.com\/\" target=\"_blank\" rel=\"noopener\">Mendeley<\/a><br \/>\nFree bibliography manager with possibilities to share huge database<\/li>\n<li><a href=\"http:\/\/www.researchgate.net\/home.Home.html\" target=\"_blank\" rel=\"noopener\">ResearchGate<\/a><br \/>\nSocial network of scientists<\/li>\n<li><a href=\"http:\/\/www.dropbox.com\/\">Dropbox <\/a><br \/>\nTo automaticaly save and share files<\/li>\n<li><a href=\"https:\/\/evernote.com\/intl\/fr\/\" target=\"_blank\" rel=\"noopener\">Evernote<\/a><br \/>\nUseful software to take notes and classify them<\/li>\n<li><a href=\"https:\/\/www.wunderlist.com\/fr\/\" target=\"_blank\" rel=\"noopener\">Wunderlist<\/a><br \/>\nFreeware to manage a to do list and to schedule the tasks of a project<\/li>\n<li><a href=\"https:\/\/biorender.com\">Biorender<\/a><br \/>\nTo draw scientific illustrations for presentations and articles<\/li>\n<li><a href=\"https:\/\/www.deepl.com\">DeepL<\/a><br \/>\nBetter than Google Translate<\/li>\n<li><a href=\"https:\/\/fromsmash.com\/\">Smash<\/a><br \/>\nTo tranfer unlimited files for free<\/li>\n<\/ul>\n<p>[\/vc_column_text][\/vc_column][\/vc_row]<\/p>\n<div style=\"margin: 20px 0;\"><div class=\"qrcswholewtapper\" style=\"text-align:center;\"><div class=\"qrcprowrapper\"  id=\"qrcwraa2leds\"><div class=\"qrc_canvass\" id=\"qrc_cuttenpages_2\" style=\"display:inline-block\" data-text=\"https:\/\/sciences-unamur.be\/bio\/system-ecotox\/resources-2\/lab-resources\/\"><\/div><div><a download=\"Lab resources.png\" class=\"qrcdownloads\" id=\"worign\">\r\n           <button type=\"button\" style=\"min-width:150px;background:#44d813;color:#000;font-weight: 600;border: 1px solid #44d813;border-radius:20px;font-size:12px;padding: 6px 0;\" class=\"uqr_code_btn\">Download QR<\/button>\r\n           <\/a><\/div><\/div><\/div><\/div>","protected":false},"excerpt":{"rendered":"<p>Statistic resources Statistiques et logiciel R : A practical website in french to address major questions with R. Great tutorials ! Toptipbio : How to analyse qPCR results with multiple reference genes Statistics How To : A practical guide to solve most common statistic problems Experimental design : How to design correctly an experiment Multiple&#8230;<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":1871,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_monsterinsights_skip_tracking":false,"footnotes":""},"class_list":["post-1861","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/sciences-unamur.be\/bio\/system-ecotox\/wp-json\/wp\/v2\/pages\/1861","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sciences-unamur.be\/bio\/system-ecotox\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sciences-unamur.be\/bio\/system-ecotox\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sciences-unamur.be\/bio\/system-ecotox\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/sciences-unamur.be\/bio\/system-ecotox\/wp-json\/wp\/v2\/comments?post=1861"}],"version-history":[{"count":24,"href":"https:\/\/sciences-unamur.be\/bio\/system-ecotox\/wp-json\/wp\/v2\/pages\/1861\/revisions"}],"predecessor-version":[{"id":3615,"href":"https:\/\/sciences-unamur.be\/bio\/system-ecotox\/wp-json\/wp\/v2\/pages\/1861\/revisions\/3615"}],"up":[{"embeddable":true,"href":"https:\/\/sciences-unamur.be\/bio\/system-ecotox\/wp-json\/wp\/v2\/pages\/1871"}],"wp:attachment":[{"href":"https:\/\/sciences-unamur.be\/bio\/system-ecotox\/wp-json\/wp\/v2\/media?parent=1861"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}